As bigger quantum processors with hundreds of qubits become increasingly available, the potential for quantum computing to solve problems intractable for classical computers is becoming more tangible. Designing efficient quantum algorithms and software in tandem is key to achieving quantum advantage. Quantum software engineering is challenging due to the unique counterintuitive nature of quantum logic. Moreover, with larger quantum systems, traditional programming using quantum assembly language and qubit-level reasoning is becoming infeasible. Automated Quantum Software Engineering (AQSE) can help to reduce the barrier to entry, speed up development, reduce errors, and improve the efficiency of quantum software. This article elucidates the motivation to research AQSE (why), a precise description of such a framework (what), and reflections on components that are required for implementing it (how).

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Quantum algorithms, represented as quantum circuits, can be used as benchmarks for assessing the performance of quantum systems. Existing datasets, widely utilized in the field, suffer from limitations in size and versatility, leading researchers to employ randomly generated circuits. Random circuits are, however, not representative benchmarks as they lack the inherent properties of real quantum algorithms for which the quantum systems are manufactured. This shortage of ‘useful’ quantum benchmarks poses a challenge to advancing the development and comparison of quantum compilers and hardware. This research aims to enhance the existing quantum circuit datasets by generating what we refer to as ‘realistic-looking’ circuits by employing the Transformer machine learning architecture. For this purpose, we introduce KetGPT, a tool that generates synthetic circuits in OpenQASM language, whose structure is based on quantum circuits derived from existing quantum algorithms and follows the typical patterns of human-written algorithm-based code (e.g., order of gates and qubits). Our three-fold verification process, involving manual inspection and Qiskit framework execution, transformer-based classification, and structural analysis, demonstrates the efficacy of KetGPT in producing large amounts of additional circuits that closely align with algorithm-based structures. Beyond benchmarking, we envision KetGPT contributing substantially to AI-driven quantum compilers and systems.

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In this work, a scalable quantum gate-based algorithm for accelerating causal inference is introduced. Specifically, the formalism of causal hypothesis testing presented in [Nat Commun 10, 1472 (2019)] is considered. Through the algorithm, the existing definition of error probability is generalized, which is a metric to distinguish between two competing causal hypotheses, to a practical scenario. The results on the Qiskit validate the predicted speedup and show that in the realistic scenario, the error probability depends on the distance between the competing hypotheses. To achieve this, the causal hypotheses are embedded as a circuit construction of the oracle. Furthermore, by assessing the complexity involved in implementing the algorithm's subcomponents, a numerical estimation of the resources required for the algorithm is offered. Finally, applications of this framework for causal inference use cases in bioinformatics and artificial general intelligence are discussed.

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In the field of quantum computing, variational quantum algorithms (VQAs) represent a pivotal category of quantum solutions across a broad spectrum of applications. These algorithms demonstrate significant potential for realising quantum computational advantage. A fundamental aspect of VQAs involves formulating expressive and efficient quantum circuits (namely ansatz), and automating the search of such ansatz is known as quantum architecture search (QAS). Recently reinforcement learning (RL) techniques is utilized to automate the search for ansatzes, know as RL-QAS. This study investigates RL-QAS for crafting ansatz tailored to the variational quantum state diagonalisation problem. Our investigation includes a comprehensive analysis of various dimensions, such as the entanglement thresholds of the resultant states, the impact of initial conditions on the performance of RL-agent, the phase transition behaviour of correlation in concurrence bounds, and the discrete contributions of qubits in deducing eigenvalues through conditional entropy metrics. We leverage these insights to devise an entanglement-guided admissible ansatz in QAS to diagonalise random quantum states using optimal resources. Furthermore, the methodologies presented herein offer a generalised framework for constructing reward functions within RL-QAS applicable to variational quantum algorithms.

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This work applies concepts from algorithmic probability to Boolean and quantum combinatorial logic circuits. The relations among the statistical, algorithmic, computational, and circuit complexities of states are reviewed. Thereafter, the probability of states in the circuit model of computation is defined. Classical and quantum gate sets are compared to select some characteristic sets. The reachability and expressibility in a space-time-bounded setting for these gate sets are enumerated and visualized. These results are studied in terms of computational resources, universality, and quantum behavior. The article suggests how applications like geometric quantum machine learning, novel quantum algorithm synthesis, and quantum artificial general intelligence can benefit by studying circuit probabilities.

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Unitary decomposition is a widely used method to map quantum algorithms to an arbitrary set of quantum gates. Efficient implementation of this decomposition allows for the translation of bigger unitary gates into elementary quantum operations, which is key to executing these algorithms on existing quantum computers. The decomposition can be used as an aggressive optimization method for the whole circuit, as well as to test part of an algorithm on a quantum accelerator. For the selection and implementation of the decomposition algorithm, perfect qubits are assumed. We base our decomposition technique on Quantum Shannon Decomposition, which generates O(344n) controlled-not gates for an n-qubit input gate. In addition, we implement optimizations to take advantage of the potential underlying structure in the input or intermediate matrices, as well as to minimize the execution time of the decomposition. Comparing our implementation to Qubiter and the UniversalQCompiler (UQC), we show that our implementation generates circuits that are much shorter than those of Qubiter and not much longer than the UQC. At the same time, it is also up to 10 times as fast as Qubiter and about 500 times as fast as the UQC.@en

Efforts to realize a sufficiently large controllable quantum processor are actively being pursued globally. These quantum devices are programmed by specifying the manipulation of quantum information via quantum algorithms. This doctoral research provides an application perspective to the design requirements of a quantum accelerator architecture. Early quantum algorithms focused specifically on the theoretical study of the benefits in computational resource cost by harnessing quantum phenomena. With small-scale quantum processors being available, the focus is now towards applying quantum algorithms to develop applications with high impact in societal, industrial, and scientific fields. No quantum devices exist that can execute quantum algorithms that can demonstrate a provable advantage for a real world use case. However, a proof of concept application pipeline can be demonstrated on a simulator framework. The research question of this dissertation is to identify high-impact long-term applications of quantum computation and formulate the corresponding logic. Three specific use cases are studied. Use case 1 involves `quantum-accelerated genome sequence reconstruction'. Faster sequencing pipeline would enable novel downstream applications like personalized medical treatment. Two different reconstruction methods, ab initio reference alignment, and de novo read assembly, are studied to identify the computational bottleneck. Corresponding quantum techniques are formulated, based on quantum search and heuristic quantum optimization, respectively. A new algorithm, quantum indexed bidirectional associative memory (QiBAM), is explicitly designed to address the requirements for approximate alignment of DNA sequences. We also proposed the quantum accelerated sequence reconstruction (QuASeR) strategy to perform de novo assembly. This is formulated as a QUBO and solved using QAOA on a gate-model simulator, as well as, on a quantum annealer. Use case 2 involves `quantum automata for algorithmic information'. A framework for causal inference based on algorithmic generative models is developed. This technique of quantum-accelerated experimental algorithmic information theory (QEAIT) can be ubiquitously applied to diverse domains. Specifically for genome analysis, the problem of identifying bit strings capable of self-replication is presented. We developed a new quantum circuit design of a quantum parallel universal linear bounded automata (QPULBA) model. This enables a superposition of classical models/programs to be executed, and their properties can be explored. The automaton prepares the universal distribution as a quantum superposition state which can be queried to estimate algorithmic properties of the causal model. Use case 3 involves `universal reinforcement learning in quantum environments'. This theoretical framework can be applied for automated scientific modeling. A universal artificial general intelligence formalism is presented that can model quantum processes. The developed quantum knowledge seeking agent (QKSA) is an evolutionary general reinforcement learning model for recursive self-improvement. It uses resource-bounded algorithmic complexity of quantum process tomography algorithms. The cost function determining the optimal strategy is implemented as a mutating gene within a quine. The utility function for an individual agent is based on a selected quantum distance measure between the predicted and perceived environment. This dissertation researches foundational techniques and develops innovative applications of quantum computation and algorithmic information. These were applied specifically for causal modeling in genomics and reinforcement learning. Further exploration of the synergies among these interdisciplinary concepts would improve our understanding of various scientific disciplines like computation, intelligence, life, and cosmology.@en

In this article, we present QuASeR, a reference-free DNA sequence reconstruction implementation via de novo assembly on both gate-based and quantum annealing platforms. This is the first time this important application in bioinformatics is modeled using quantum computation. Each one of the four steps of the implementation (TSP, QUBO, Hamiltonians and QAOA) is explained with a proof-of-concept example to target both the genomics research community and quantum application developers in a self-contained manner. The implementation and results on executing the algorithm from a set of DNA reads to a reconstructed sequence, on a gate-based quantum simulator, the D-Wave quantum annealing simulator and hardware are detailed. We also highlight the limitations of current classical simulation and available quantum hardware systems. The implementation is open-source and can be found on https://github.com/QE-Lab/QuASeR.

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With small-scale quantum processors transitioning from experimental physics labs to industrial products, these processors in a few years are expected to scale up and be more robust for efficiently computing important algorithms in various fields. In this paper, we propose a quantum algorithm to address the challenging field of data processing for genome sequence reconstruction. This research describes an architecture-aware implementation of a quantum algorithm for sub-sequence alignment. A new algorithm named QiBAM (quantum indexed bidirectional associative memory) is proposed, which uses approximate pattern-matching based on Hamming distances. QiBAM extends the Grover’s search algorithm in two ways, allowing: (1) approximate matches needed for read errors in genomics, and (2) a distributed search for multiple solutions over the quantum encoding of DNA sequences. This approach gives a quadratic speedup over the classical algorithm. A full implementation of the algorithm is provided and verified using the OpenQL compiler and QX Simulator framework. Our implementation represents a first exploration towards a full-stack quantum accelerated genome sequencing pipeline design. @en

Inferring algorithmic structure in data is essential for discovering causal generative models. In this research, we present a quantum computing framework using the circuit model, for estimating algorithmic information metrics. The canonical computation model of the Turing machine is restricted in time and space resources, to make the target metrics computable under realistic assumptions. The universal prior distribution for the automata is obtained as a quantum superposition, which is further conditioned to estimate the metrics. Specific cases are explored where the quantum implementation offers polynomial advantage, in contrast to the exhaustive enumeration needed in the corresponding classical case. The unstructured output data and the computational irreducibility of Turing machines make this algorithm impossible to approximate using heuristics. Thus, exploring the space of program-output relations is one of the most promising problems for demonstrating quantum supremacy using Grover search that cannot be dequantized. Experimental use cases for quantum acceleration are developed for self-replicating programs and algorithmic complexity of short strings. With quantum computing hardware rapidly attaining technological maturity, we discuss how this framework will have significant advantage for various genomics applications in meta-biology, phylogenetic tree analysis, protein-protein interaction mapping and synthetic biology. This is the first time experimental algorithmic information theory is implemented using quantum computation. Our implementation on the Qiskit quantum programming platform is copy-left and is publicly available on GitHub.@en

This paper presents the definition and implementation of a quantum computer architecture to enable creating a new computational device - a quantum computer as an accelerator. A key question addressed is what such a quantum computer is and how it relates to the classical processor that controls the entire execution process. In this paper, we present explicitly the idea of a quantum accelerator which contains the full stack of the layers of an accelerator. Such a stack starts at the highest level describing the target application of the accelerator. The next layer abstracts the quantum logic outlining the algorithm that is to be executed on the quantum accelerator. In our case, the logic is expressed in the universal quantum-classical hybrid computation language developed in the group, called OpenQL, which visualised the quantum processor as a computational accelerator. The OpenQL compiler translates the program to a common assembly language, called cQASM, which can be executed on a quantum simulator. The cQASM represents the instruction set that can be executed by the micro-architecture implemented in the quantum accelerator. We propose that the industrial and societal application developers use perfect qubits that have no decoherence or error-rates. The perfect qubits offers facilities to the quantum application developer and they are not blocked by issues such as decoherence.

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Quantum computers hold great promise for accelerating computationally challenging algorithms on noisy intermediate-scale quantum (NISQ) devices in the upcoming years. Much attention of the current research is directed towards algorithmic research on artificial data that is disconnected from live systems, such as optimization of systems or training of learning algorithms. In this paper we investigate the integration of quantum systems into industry-grade system architectures. In this work we propose a system architecture for the integration of quantum accelerators. In order to evaluate our proposed system architecture we investigated various data-driven functions for various accelerators, including a classical system, a gate-based quantum accelerator and a quantum annealer. The data-driven function predict user preference and is trained on real-world data. This work also includes an evaluation of the quantum enhanced kernel, that previously was only evaluated on artificial data. In our evaluation, we showed that the quantum-enhanced kernel performs at least equally well to a classical state-of-The-Art kernel when simulated. We also showed a low reduction in accuracy and latency numbers within acceptable bounds when running on the gate-based IBM quantum accelerator. We therefore conclude it is feasible to integrate NISQ-era devices in industry-grade system architectures in preparation for future advancements in quantum hardware.

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