Rv

RJP van Berlo

13 records found

Authored

Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels

Predicting metabolic fluxes using gene expression differences as constraints

Vertical integration of high-throughput measurements to derive functional and regulatory interactions in S. cerevisiae
Doctoral thesis (2010) - RJP van Berlo

Shifts in growth strategies reflect tradeoffs in cellular economics
Journal article (2009) - D Molenaar, RJP van Berlo, D. de Ridder, B Teusink

Metabolite and reaction inference based on enzyme specificities

Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels

Revealing cellular objective functions by incorparating gene expression-based contraints in a flux balance analysis framework
Conference paper (2008) - RJP van Berlo, D. de Ridder, M.J.T. Reinders

Predicting metabolic flow-routes based on gene expression data
Conference paper (2007) - RJP van Berlo, D. de Ridder, M.J.T. Reinders

Protein complex prediction using an integrative bioinformatics approach

Flux minimization analysis: gene downregulation indicates hierarchical control of metabolic fluxes

Predicting protein complexes by employing an integrative bioinformatics approach
Conference paper (2006) - RJP van Berlo, L.F.A. Wessels, M.J.T. Reinders

Studying the conditions for learning dynamic bayesian networks to discover genetic regulatory networks
Conference paper (2005) - RJP van Berlo, EP van Someren, M.J.T. Reinders

Examining the suitability of dynamic Bayesian networks for discovering genetic regulatory interactions
Conference paper (2005) - RJP van Berlo, EP van Someren, M.J.T. Reinders