Towards community-driven metadata standards for light microscopy

Tiered specifications extending the OME model

Journal article (2021)

Authors

Mathias Hammer Technische Universität Darmstadt, UMass Chan Medical School
Maximiliaan Huisman UMass Chan Medical School
Alessandro Rigano UMass Chan Medical School
Ulrike Boehm Howard Hughes Medical Institute, Cambridge
James J. Chambers University of Massachusetts Amherst
Nathalie Gaudreault Allen Institute for Cell Science, Seattle
Claire M. Brown McGill University
C.S. Smith ImPhys/Computational Imaging - AS , Team Carlas Smith - Mechanical, Maritime and Materials Engineering
David Grünwald UMass Chan Medical School
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Research Group
Team Carlas Smith (Mechanical, Maritime and Materials Engineering) (TU Delft)
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Published Date

2021

Language

English

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Faculty

Mechanical, Maritime and Materials Engineering

Department

Delft Center for Systems and Control

Research Group

Team Carlas Smith

Abstract

Rigorous record-keeping and quality control are required to ensure the quality, reproducibility and value of imaging data. The 4DN Initiative and BINA here propose light Microscopy Metadata Specifications that extend the OME Data Model, scale with experimental intent and complexity, and make it possible for scientists to create comprehensive records of imaging experiments.

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